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November 26th, 2009

Rush Limbaugh says the climate scientists should be 'drawn and quartered'. Glenn Beck touts stolen emails as evidence for a 'scam,' and the Moonie Times says, well who the hell cares. The Moonies are down to 45,000 uber-wingnut subscribers. Last week we explained the story behind one of the stolen emails. Paleo-climatologist Micheal Mann of Realclimate, who was intimately involved in the issue discussed in some of the emails in question, was kind enough to take time out of his holiday week to provide further clarification.

DS: When Phil Jones wrote in 1999, "I've just completed Mike's Nature trick of adding in the real temps to each series for the last 20 years (i. e. from 1981 onwards) and from 1961 for Keith's to hide the decline," what did he mean?

Michael Mann: Phil Jones has publicly gone on record indicating that he was using the term "trick" in the sense often used by people, as in "bag of tricks", or "a trick to solving this problem ...", or "trick of the trade". In referring to our 1998 Nature article, he was pointing out simply the following: our proxy record ended in 1980 (when the proxy data set we were using terminates) so, it didn't include the warming of the past two decades. In our Nature article we therefore also showed the post-1980 instrumental data that was then available through 1995, so that the reconstruction could be viewed in the context of recent instrumental temperatures. The separate curves for the reconstructed temperature series and for the instrumental data were clearly labeled.

The reference to "hide the decline" is referring to work that I am not directly associated with, but instead work by Keith Briffa and colleagues. The "decline" refers to a well-known decline in the response of only a certain type of tree-ring data (high-latitude tree-ring density measurements collected by Briffa and colleagues) to temperatures after about 1960. In their original article in Nature in 1998, Briffa and colleagues are very clear that the post-1960 data in their tree-ring dataset should not be used in reconstructing temperatures due to a problem known as the "divergence problem" where their tree-ring data decline in their response to warming temperatures after about 1960.  "Hide" was therefore a poor word choice, since the existence of this decline, and the reason not to use the post 1960 data because of it, was not only known, but was indeed the point emphasized in the original Briffa et al Nature article. There is a summary of that article available on this NOAA site.

There have been many articles since then trying to understand the reason for this problem, which applies largely to only one very specific type of proxy data (tree-ring wood density data from higher latitudes).

As for my research in this area more generally, there was a study commissioned by the National Academies of Science back in 2006 to assess the validity of paleoclimate reconstructions in general, and my own work in specific. A summary of that report, and link to it, is available here. And the New York Times (6/22/06), in an article about the report entitled "Science Panel Backs Study on Warming Climate" had the following things to say:

A controversial paper asserting that recent warming in the Northern Hemisphere was probably unrivaled for 1,000 years was endorsed today, with a few reservations, by a panel convened by the nation's preeminent scientific body...At a news conference at the headquarters of the National Academies, several members of the panel reviewing the study said they saw no sign that its authors had intentionally chosen data sets or methods to get a desired result. "I saw nothing that spoke to me of any manipulation," said one member, Peter Bloomfield, a statistics professor at North Carolina State University. He added that his impression was the study was "an honest attempt to construct a data analysis procedure."

DS: You wrote, "Perhaps we'll do a simple update to the Yamal post. As we all know, this isn't about truth at all, its about plausibly deniable accusations," what's the story there?

MM: This refers to a particular tree-ring reconstruction of Keith Briffa’s. These tree-ring data are just one of numerous tree-ring records used to reconstruct past climate. Briffa and collaborators were criticized (unfairly in the view of many of my colleagues and me) by a contrarian climate change website based on what we felt to be a misrepresentation of their work.  A further discussion can be found on the site "RealClimate.org" that I co-founded and help run. It is quite clear from the context of my comments that what I was saying was that the attacks against Briffa and colleagues were not about truth but instead about making plausibly deniable accusations against him and his colleagues.

We attempted to correct the misrepresentations of Keith's work in the "RealClimate article mentioned above, and we invited him and his co-author Tim Osborn to participate actively in responding to any issues raised in the comment thread of the article which he did.  

DS: Phil Jones again wrote "Can you delete any emails you may have had with Keith re AR4? Keith will do likewise. He's not in at the moment -minor family crisis. Can you also email Gene and get him to do the same? I don't have his new email address. We will be getting Caspar to do likewise."

MM: This was simply an email that was sent to me, and can in no way be taken to indicate approval of, let alone compliance with, the request. I did not delete any such email correspondences.

DS: You wrote, "I think we have to stop considering Climate Research as a legitimate peer-reviewed journal. Perhaps we should encourage our colleagues in the climate research community to no longer submit to, or cite papers in, this journal"?

MM: This comment was in response to a very specific incident regarding a paper by Soon and Baliunas published in the journal "Climate Research". An editor of the journal, with rather contrarian views on climate change, appeared to several of us to be gaming the system to let through papers that clearly did not meet the standards of quality for the journal. The chief editor (Hans von Storch), and half of the editorial board, resigned in protest of the publication of the paper, after the publisher refused to allow von Storch the opportunity to write an editorial about how the peer review process had failed in this instance.

Please see e.g. this post at RealClimate. Especially the 3rd bullet item -- see the various links, which lead to letters from chief editor Von Storch, and an article by the journalist Chris Mooney about the incident.

Scientists all choose journals in which we publish and we all recommend to each other and our students which journals they should publish in. People are free to publish wherever they can and are free to recommend some journals over others. For an example of this behavior in daily life, people make choices and recommendations all the time in their purchasing habits. It is highly unusual for a chief editor and half of an editorial board to resign and that indicates a journal in turmoil that should possibly be avoided. Similarly, authors are allowed to cite any papers they want, although usually the editor will note incorrect or insufficient citing.

I support the publication of "skeptical" papers that meet the basic standards of scientific quality and merit. I myself have published scientific work that has been considered by some as representing a skeptical point of view on matters relating to climate change (for example, my work demonstrating the importance of natural oscillations of the climate on multidecadal timescales). Skepticism in the truest scientific sense of the word is good and is indeed essential to science.  Skepticism should not be confused, however, with contrarianism that does not meet the basic standards of scientific inquiry.

DS: "It would be nice to try to contain the putative "MWP".

MM: In this email, I was discussing the importance of extending paleoclimate reconstructions far enough back in time that we could determine the onset and duration of the putative "Medieval Warm Period". Since this describes an interval in time, it has to have both a beginning and end. But reconstructions that only go back 1000 years, as most reconstructions did at the time, didn't reach far enough back to isolate the beginning of this period, i.e. they are not long enough to "contain" the interval in question. In more recent work, such as the IPCC Fourth Assessment Report published in 2007, the paleoclimate reconstructions stretch nearly 2000 years back in time, which is indeed far enough back in time to "contain" or "isolate" this period in time.


Autoimmune and the senses

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Am I the only one who's noticed that my senses become more sensitive while flaring?

For example - I never used to have a problem cutting onions, but while flaring I cry and feel searing pain in my eyes that takes hours for to fully go away. I've also noticed that I sneeze more, have less tolerance for loud noises and bright lights, and am much more sensitive to touch.

Obviously all of that onion chopping for Thanksgiving made me think of this. ;) I'd love to hear your takes on it.

I hope you all have a wonderful holiday and are feeling well!!!

Millions of us will be sitting down to enjoy a good meal and great company today, followed by gravy drenched sandwiches for the rest of the week. The centerpiece of the traditional Thanksgiving feast on many US tables will be a stuffed and roasted Meleagris gallopavo, better known as the domestic descendant of the American wild turkey. It's an appropriate choice. M. gallopavo was highly valued by Native Americans and is a true blue, red-blooded American meal. One founding father was so taken with it that he proposed the turkey as our national bird, instead of what he considered the less admirable Bald Eagle:

For the Truth the Turkey is in Comparison a much more respectable Bird, and withal a true original Native of America ... a Bird of Courage, and would not hesitate to attack a Grenadier of the British Guards who should presume to invade his Farm Yard with a red Coat on. -- Benjamin Franklin January 26, 1784

Birds have one of the most interesting evolutionary tales in all the animal kingdom. If it could be summed up in one word, that word might be ... dinosaur! It happens that early paleontologists were keen on the dino-bird relationship. But over the next few decades, as larger and less bird-like terrible lizards were unearthed, the dino-bird idea faded away. Now it's come roaring back and it's easy to see why.

Artist's impression based on the feathered dinosaur fossil Anchiornis huxleyi, discovered in north-eastern China, Courtesy of the Guardian.

Fossils of dinos in all shapes and sizes with beautifully preserved feathers have been found! Complex structures like feathers could hardly have evolved twice. Not all paleo-ornithologists are convinced that birds evolved from dinos -- which came first, the chicken ancestor or the raptor egg? -- but most everyone agrees that either birds evolved from a type of raptor or some species of what we call raptors evolved from early birds. The smart money is on the former, but the two ideas are not completely exclusive. In the later Jurassic and early Cretaceous, with a young, rich, and shallow Atlantic ocean a few hundred miles wide sprinkled liberally with tropical islands and archipelagos, natural selection had ample opportunity to sculpt and whittle away on isolated populations of flightless birds. It's possible that early birds, many still equipped with atavistic teeth and claws, could have given rise to species that are dead ringers for traditional terrestrial dinos.

One of the neatest things about birds is their supercharged respiratory system. Because of a complex system of bony air pockets and some innovative piping, fresh oxygenated air flows over avian lung tissue when they inhale and when they exhale. If birds inherited that nifty adaptation from early dinos, it helps explain why birds are such powerhouse fliers today and why dinos came charging out of the gate and quickly grew to dominance in the oxygen depleted aftermath of the devastating Permian-Triassic extinction 250 million years ago. It also suggests your average raptor may have had the best of both metabolic worlds; able to rest with the efficiency of a crocodile but rev up and chase down prey like a lion.

In fact, birds are so closely related to dinos that our best shot for creating a living analogue lays not in cloning Velociraptors from ancient DNA, but in the genes of a modern avian like the scrumptious one sitting on your holiday table. By suppressing some genes and freeing others, it's conceivable that a sort of dino-chicken combo might be created. Imagine a giant muscular carnivorous turkey, maybe with a mouth full of big pointy teeth and four feathered limbs tipped with razor sharp claws. The kind of creature that might turn the tables on us hairy bipedal rats, giving a newer, macabre meaning to gobble-gobble: For thou art crunchy and taste good with ketchup.  


Kent will not use their temporary floodlights next season at Canterbury because of previous problems in windy conditions.
Spinner contacts our blogger Ali as comments backfire

Midday Open Thread

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  • Biden Pardons Single Yam In Vice Presidential Thanksgiving Ritual.

  • What's cooking? Butterballs or cheese balls

    If you are in Oregon this Thanksgiving, you stand a better than average chance of encountering Tofurkey. More people in New York are looking for caterers to prepare the holiday meal than anywhere else in the country. Live in the Southeast? Brace yourself for a big scoop of broccoli casserole.

    And no matter where in the United States you are, don’t be surprised if the host molds refrigerated breadstick dough and bakes it into a cornucopia centerpiece. It is the break-out hit recipe of the season at Allrecipes.com, the nation’s largest cooking Web site.

  • Think Progress does a purity test check on current Republican officeholders who probably wouldn't pass the new RNC litmus test.
  • We'll take that, thanks. In a move that Norwegian officials said is historically unprecedented, Iranian officers have confiscated Shirin Ebadi's 2003 Nobel Peace Prize. The 62-year-old lawyer won the Peace Prize - the first by an Iranian - for her work on behalf of Iranian political activists, religious and ethnic minorities, women and children, much of it through the Center for the Defense of Human Rights. She has suffered intimidation and harassment for years from the authorities, but it was stepped up after the Nobel came her way.
  • "Loosey Goosey" evaluation plagues health-care cost analyses, says Office of Management and Budget Director Peter Orszag.
  • Small farmer Christie Aschwanden discusses Thanksgiving turkey for the soul:

    By the time butchering day rolls around in early November, I've spent more than six months nurturing my flock of heritage turkeys from day-old poults into full-size roasters. This spring I hatched eggs from my breeding stock of three hens (and a tom) that I kept over from last season's flock. I know my turkeys are destined for the Thanksgiving table, yet it's hard for me to remain completely detached.

  • Mike Albo says the yearly hysteria over Bionicles and Barbies reflects a dark vision of how we buy.
  • In the view of Robert Scheer, God's work is still being done on Wall Street:

    Jail, anyone? Perhaps that's too harsh, and at any rate premature, but is anyone ever going to be held accountable for the behind-the-scenes sweetheart deals that passed tens of billions of taxpayer dollars through the AIG shell game to the very banks that caused the financial meltdown? Or for the many other acts of double-dealing that left one out of three American homeowners owing much more than their houses were worth while the folks who swindled them were rewarded with hundreds of billions in public money?

    Undoubtedly not, since the same folks who are most culpable wrote the laws that made this, and the other scams at the heart of the banking collapse, perfectly legal. And guess what? They're back at work in the government, writing the new laws that will, they claim, prevent us from being had once again.

  • Soup kitchens and special arrangements will provide a lot of meals for hungry Americans today, but what about the rest of the year?
  • Like many American Indians, Mary Annette Pember, a member of the Red Cliff Ojibwe tribe, has mixed feelings about Thanksgiving.
  • One in every four Afghan combat soldiers quit in the year ending in September, according to the U.S. Department of Defense,a statistic that belies the happy talk about U.S. success in getting Kabul's military up to speed.
  • James Fallows casts a spotlight on President Obama's supposed failures on his China visit.
  • Does Radiohead's "Idioteque" best describe the '00s decade? Colin Horgan thinks so.

    The blogosphere and social media furthered our alternate selves, projecting a persona that exists in a meta-reality, both everywhere and nowhere simultaneously.


his image locates the view around Cygnus X-3 within Fermi's all-sky map. Credit: NASA/DOE/Fermi LAT

Fermi's Large Area Telescope has detected bursts of gamma-rays in the binary system Cygnus X-3, which astronomers say are coming from a microquasar. While microquasars have strong emissions across is a broad range of wavelengths, this is the first time this type of object has been detected in gamma rays. "Cygnus X-3 is a genuine microquasar and it's the first for which we can prove high-energy gamma-ray emission," said Stéphane Corbel at Paris Diderot University in France.
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Images of known MBCs from UH 2.2-meter telescope data. Credit: Henry Hsieh

Asteroids are rocky bodies which belong between Mars and Jupiter. Comets are icy bodies that belong way out beyond Pluto. So what are comet-like objects doing in the asteroid belt?

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It's already caused a mini-crash in London:

http://news.bbc.co.uk/1/hi/business/8381258.stm

When even the rich Arabs are going out of business you just KNOW you're fucked! This looks serious.

President Barack Obama this morning released a special early weekly address in honor of Thanksgiving, expressing gratitude to the troops and their families, acknowledging the tough economic times for many Americans this year, and vowing to continue to work to solve the nation's problems in the year ahead.

But we cannot rest – and my administration will not rest – until we have revived this economy and rebuilt it stronger than before; until we are creating jobs and opportunities for middle class families; until we have moved beyond the cycles of boom and bust – of reckless risk and speculation – that led us to so much crisis and pain these past few years.

And amidst the good wishes for the holiday, the President made a couple of promises about the immediate future and what Americans can expect, and what we can hope for when Thanksgiving 2010 rolls around:

Next week, I’ll be meeting with owners of large and small businesses, labor leaders, and non-for-profits from across the country, to talk about the additional steps we can take to help spur job creation. I will work with the Congress to enact them quickly. And it is my fervent hope – and my heartfelt expectation – that next Thanksgiving we will be able to celebrate the fact that many of those who have lost their jobs are back at work, and that as a nation we will have come through these difficult storms stronger and wiser and grateful to have reached a brighter day.

The full address can be found beneath the fold or on the White House website.


I IS TURKEY

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( You are about to view content that may not be appropriate for minors. )

On this early morning of the Thanksgiving holiday, let us give thanks for the political rumor mill. The rumor mill this week has been deliciously bountiful, having churned out a beaut from the Empire State.

Consider this bit of 2010 speculation an early feast for political junkies: a Democratic Senator in a blue state. Getting primaried. From the right. By a former Congressman and statewide candidate. From the South.

Kirsten Gillibrand, meet (?) Harold Ford Jr.

Democratic sources say that former Tennessee Rep. Harold Ford Jr. -- who relocated to New York City after his unsuccessful Senate bid in 2006 -- has been talking about the possibility of running against vulnerable rookie New York Sen. Kirsten Gillibrand.

Ford, who was mentioned as a possible appointee to replace Hillary Clinton in late 2007, has reportedly told associates that he's skeptical about the idea. But he may have commissioned a poll to test his popularity, according to a Tuesday night post on DemocraticUnderground.com.

The comment at DU about the "testing the waters" poll is the most "rumor-y" part of the story, but that would, if true, suggest that either Ford or someone in his circle is serious enough about the idea to put some money down on it.

Ford, while somewhat ensconced in a new post-candidate life (he is recently married and is working as an executive for Merrill Lynch), has not completely parted ways with the political arena. He has remained as the head of the DLC, and was oft-rumored to be considering a bid for Governor in his home state of Tennessee in 2010. He does have some credibility in beltway circles (including a stint as a political analyst for NBC/MSNBC) and he raised a formidable warchest of over $15 million when he ran unsuccessfully for the US Senate in Tennessee in 2006.

That said, it is not hard to imagine why Ford is skeptical about making such a race. Democratic primary challenges from the right in a state like New York are hardly an expressway to political success, to be sure. In some ways, it might well be to Gillibrand's benefit to get primaried from her right credibly. A Gillibrand-Ford matchup would certainly shore up her bonafides with the Democratic base, some of which have not warmed to her since her appointment. It will also do wonders for enhancing her statewide name recognition, which is still flagging.

In the final analysis, it makes for great speculation, but a Gillibrand-Ford race just does not feel like a legitimate possibility. Ford is a lot of things, but he is not dumb. I can't imagine a 39 year-old politico ending his career on a longshot primary bid where the chances of success are modest (and that is being generous).

Meanwhile, we are now nearly a week removed from the "breaking story" that Rudy Giuliani was planning a 2010 bid for the US Senate. Days later, at least one New York media outlet thinks that Giuliani is leading the press corps on a little political snipe hunt:

Rudy Giuliani, the big scoop went, had decided to challenge Kirsten Gillibrand for her U.S. Senate seat next year and would announce his candidacy "in the next 48 hours."

120 hours later (and counting), the world is still waiting to hear from Rudy. And as the minutes, hours and days pass, the scoop is feeling more and more like a red herring.

The rumor, which was broken by three reporters for the NY Daily News last week, was that Giuliani was demurring from a gubernatorial bid (where recent polling has shown him trailing possible Democratic contender Andrew Cuomo) and instead deflecting his attentions to a Senate bid against appointed Sen. Kirsten Gillibrand. The story went on to suggest that Giuliani would then use that race as a springboard to a 2012 Presidential bid.

Steve Kornacki's piece at the New York Observer casts some doubts on Giuliani's nascent Senate bid, and suggests that the NYT story about Giuliani begging off the gubernatorial race might have been the catalyst:

This is not how candidacies are launched. Had it been part of some grand roll-out strategy, last Thursday's leak would have been followed by some kind of public statement or appearance by Rudy. Instead, he's been silent and invisible while the momentum generated by the story has morphed into confusion.

The fact that he hasn't followed up on the news and the fact that his camp (such as it is these days) couldn't get its story straight suggests Rudy might have been pursuing a damage-control strategy last week. After all, the news about his Senate candidacy broke just two hours after The New York Times reported that Rudy had decided not to run for governor next year.

Recent polling in the race has been all over the map. On Tuesday, Zogby released an IVR poll (traditional sampling, not their interactive polls, which have typically garbage) which had Gillibrand and Giuliani in a toss-up, with Giuliani up by two. Rasmussen followed Wednesday, as Rasmussen has done often as of late, with a much more GOP-friendly outcome (Giuliani +13).


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This video compilation of the STS-129 ascent is incredible! (UPDATE: The user has taken it down for editing, but you can watch it at this link. We'll repost it as soon as it is available again.) It includes video highlights from ground, air, SRB and external tank cameras during the launch of Atlantis on Nov. 16, 2009. It will give you a new appreciation for the space shuttle. The music is great, as well. Not to be missed!
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where in the universe 81

Here's this week's image for the WITU Challenge, to test your visual knowledge of the cosmos. You know what to do: take a look at this image and see if you can determine where in the universe this image is from; give yourself extra points if you can name the instrument responsible for the image. We’ll provide the image today, but won’t reveal the answer until tomorrow. This gives you a chance to mull over the image and provide your answer/guess in the comment section. Please, no links or extensive explanations of what you think this is — give everyone the chance to guess. Best wishes to everyone celebrating Thanksgiving, no matter where you are!
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November 25th, 2009

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Nazi doctor Josef Mengele was likely behind the astonishing number of blonde twins in a remote Brazilian town, recent reports said. But a new study says it was just genetics acting naturally.



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A "bathtub ring" of minerals inside Columbus crater makes the basin the best place yet to study the chemistry of so-called fossil lakes on Mars, researchers say.



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Seen under ultraviolet light, a ripening banana's brown spots are each ringed by an eerie blue glow created by dying cells, offering researchers a new way to study how plants live and die, a new study says.



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